Cristin-resultat-ID: 1042995
Sist endret: 30. oktober 2014, 07:04
NVI-rapporteringsår: 2013
Resultat
Vitenskapelig artikkel
2013

Restricted variation in plant barcoding markers limits identification in closely related bryophyte species

Bidragsytere:
  • Kristian Hassel
  • Rossana Segreto og
  • Torbjørn Ekrem

Tidsskrift

Molecular Ecology Resources
ISSN 1755-098X
e-ISSN 1755-0998
NVI-nivå 1

Om resultatet

Vitenskapelig artikkel
Publiseringsår: 2013
Publisert online: 2013
Trykket: 2013
Volum: 13
Hefte: 6
Sider: 1047 - 1057

Importkilder

Isi-ID: 000325627700009
Scopus-ID: 2-s2.0-84885481324

Beskrivelse Beskrivelse

Tittel

Restricted variation in plant barcoding markers limits identification in closely related bryophyte species

Sammendrag

Species-level identification and delimitation of bryophytes using the proposed general barcode markers for land plants has been challenging. Bryophyta (mosses) is the second most species-rich group of land plants after angiosperms, and it is thus of great importance to find useful barcoding regions also for this group of plants. We investigated how the plastid regions atpF–atpH, rbcL and trnH–psbA and the nuclear ITS2 region performed as barcode markers on closely related bryophyte taxa of selected moss (Bartramia, Distichium, Fissidens, Meesia and Syntrichia) and liverwort (Blepharostoma) genera from boreal and arctic regions. We also evaluated how sequencing success of herbarium specimens is related to length of the sequenced fragment, specimen age and taxonomic group. Sequencing success was higher for shorter fragments and younger herbarium specimens, but was lower than expected in the genera Distichium and Fissidens, indicating imperfect universality of the primers used. None of the studied DNA barcode regions showed a consistent barcode gap across the studied genera. As a single locus, the region atpF–atpH performed slightly better than rbcL and ITS2 and much better than trnH–psbA in terms of grouping conspecific sequences in monophyletic groups. This marker also gave a higher percentage of correct hits when conducting blast searches on a local database of identified sequences. Concatenated data sets of two and three markers grouped more conspecific sequences in monophyletic groups, but the improvement was not great compared with atpF–atpH alone. A discussion of recent studies testing barcode regions for bryophytes is given. We conclude that atpF–atpH, rbcL and ITS2 are to be the most promising barcode markers for mosses.

Bidragsytere

Kristian Hassel

  • Tilknyttet:
    Forfatter
    ved Institutt for naturhistorie ved Norges teknisk-naturvitenskapelige universitet

Rossana Segreto

  • Tilknyttet:
    Forfatter
    ved Institutt for naturhistorie ved Norges teknisk-naturvitenskapelige universitet
Aktiv cristin-person

Torbjørn Ekrem

  • Tilknyttet:
    Forfatter
    ved Institutt for naturhistorie ved Norges teknisk-naturvitenskapelige universitet
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